Index

B

built-in function porespy.beta.df_to_tortuosity() porespy.beta.fibers_1D() porespy.beta.fibers_2D() porespy.beta.flux() porespy.beta.get_block_sizes() porespy.beta.local_diff() porespy.beta.polydisperse_cylinders() porespy.beta.rev_tortuosity() porespy.beta.tau_from_cmap() porespy.beta.tortuosity_bt() porespy.filters.apply_chords() porespy.filters.apply_chords_3D() porespy.filters.apply_padded() porespy.filters.capillary_transform() porespy.filters.chunked_func() porespy.filters.dilate() porespy.filters.distance_transform_lin() porespy.filters.erode() porespy.filters.fftmorphology() porespy.filters.fill_closed_pores() porespy.filters.fill_invalid_pores() porespy.filters.fill_surface_pores() porespy.filters.find_closed_pores() porespy.filters.find_disconnected_voxels() porespy.filters.find_dt_artifacts() porespy.filters.find_floating_solid() porespy.filters.find_invalid_pores() porespy.filters.find_peaks() porespy.filters.find_small_clusters() porespy.filters.find_surface_pores() porespy.filters.find_trapped_clusters() porespy.filters.flood() porespy.filters.flood_func() porespy.filters.hold_peaks() porespy.filters.local_thickness() porespy.filters.local_thickness_bf() porespy.filters.local_thickness_conv() porespy.filters.local_thickness_dt() porespy.filters.local_thickness_imj() porespy.filters.nl_means_layered() porespy.filters.nphase_border() porespy.filters.pc_to_satn() porespy.filters.pc_to_seq() porespy.filters.porosimetry() porespy.filters.prune_branches() porespy.filters.reduce_peaks() porespy.filters.region_size() porespy.filters.satn_to_seq() porespy.filters.seq_to_satn() porespy.filters.size_to_pc() porespy.filters.size_to_satn() porespy.filters.size_to_seq() porespy.filters.snow_partitioning() porespy.filters.snow_partitioning_n() porespy.filters.snow_partitioning_parallel() porespy.filters.trim_disconnected_voxels() porespy.filters.trim_extrema() porespy.filters.trim_floating_solid() porespy.filters.trim_nearby_peaks() porespy.filters.trim_nonpercolating_paths() porespy.filters.trim_saddle_points() porespy.filters.trim_saddle_points_legacy() porespy.filters.trim_small_clusters() porespy.generators.blobs() porespy.generators.borders() porespy.generators.conical_capillary() porespy.generators.cylinders() porespy.generators.cylindrical_pillars_array() porespy.generators.cylindrical_pillars_mesh() porespy.generators.cylindrical_plug() porespy.generators.elevation() porespy.generators.faces() porespy.generators.fractal_noise() porespy.generators.insert_shape() porespy.generators.lattice_spheres() porespy.generators.line_segment() porespy.generators.overlapping_spheres() porespy.generators.polydisperse_spheres() porespy.generators.pseudo_electrostatic_packing() porespy.generators.pseudo_gravity_packing() porespy.generators.ramp() porespy.generators.random_cantor_dust() porespy.generators.random_spheres() porespy.generators.rectangular_pillars_array() porespy.generators.sierpinski_foam() porespy.generators.spheres_from_coords() porespy.generators.voronoi_edges() porespy.imshow() porespy.io.dict_to_vtk() porespy.io.folder_to_stack() porespy.io.open_paraview() porespy.io.to_palabos() porespy.io.to_paraview() porespy.io.to_stl() porespy.io.to_vtk() porespy.io.zip_to_stack() porespy.metrics.bond_number() porespy.metrics.boxcount() porespy.metrics.chord_counts() porespy.metrics.chord_length_distribution() porespy.metrics.find_h() porespy.metrics.find_porosity_threshold() porespy.metrics.is_percolating() porespy.metrics.lineal_path_distribution() porespy.metrics.mesh_surface_area() porespy.metrics.mesh_volume() porespy.metrics.pc_map_to_pc_curve() porespy.metrics.percolating_porosity() porespy.metrics.phase_fraction() porespy.metrics.pore_size_distribution() porespy.metrics.porosity() porespy.metrics.porosity_by_type() porespy.metrics.porosity_profile() porespy.metrics.prop_to_image() porespy.metrics.props_to_DataFrame() porespy.metrics.radial_density_distribution() porespy.metrics.region_interface_areas() porespy.metrics.region_surface_areas() porespy.metrics.region_volumes() porespy.metrics.regionprops_3D() porespy.metrics.rev_porosity() porespy.metrics.rev_tortuosity() porespy.metrics.satn_profile() porespy.metrics.two_point_correlation() porespy.networks.add_boundary_regions() porespy.networks.create_model() porespy.networks.diffusive_size_factor_AI() porespy.networks.diffusive_size_factor_DNS() porespy.networks.find_conns() porespy.networks.find_junctions() porespy.networks.find_throat_junctions() porespy.networks.generate_voxel_image() porespy.networks.get_throat_area() porespy.networks.juncs_to_pore_centers() porespy.networks.junctions_to_network() porespy.networks.label_boundaries() porespy.networks.label_phases() porespy.networks.magnet() porespy.networks.map_to_regions() porespy.networks.merge_nearby_juncs() porespy.networks.partition_skeleton() porespy.networks.regions_to_network() porespy.networks.regions_to_network_parallel() porespy.networks.skeleton() porespy.networks.skeleton_parallel() porespy.networks.snow2() porespy.simulations.drainage() porespy.simulations.drainage_bf() porespy.simulations.drainage_conv() porespy.simulations.drainage_dt() porespy.simulations.drainage_dt_conv() porespy.simulations.ibip() porespy.simulations.imbibition() porespy.simulations.imbibition_bf() porespy.simulations.imbibition_conv() porespy.simulations.imbibition_dt() porespy.simulations.imbibition_dt_conv() porespy.simulations.injection() porespy.simulations.qbip() porespy.simulations.tortuosity_fd() porespy.tools.align_image_with_openpnm() porespy.tools.all_to_uniform() porespy.tools.area_of_triangle() porespy.tools.ball() porespy.tools.bbox_to_slices() porespy.tools.block_size_to_divs() porespy.tools.calculate_area_and_volume() porespy.tools.center_of_mass() porespy.tools.create_mc_template_list() porespy.tools.cube() porespy.tools.disk() porespy.tools.extend_slice() porespy.tools.extract_cylinder() porespy.tools.extract_regions() porespy.tools.extract_subsection() porespy.tools.face_orientation() porespy.tools.find_bbox() porespy.tools.find_outer_region() porespy.tools.get_block_sizes() porespy.tools.get_edt() porespy.tools.get_fixtures_path() porespy.tools.get_planes() porespy.tools.get_skel() porespy.tools.get_slices_grid() porespy.tools.get_slices_multigrid() porespy.tools.get_slices_random() porespy.tools.get_slices_slabs() porespy.tools.get_strel() porespy.tools.get_tqdm() porespy.tools.in_hull() porespy.tools.insert_cylinder() porespy.tools.insert_sphere() porespy.tools.isolate_object() porespy.tools.jit_extend_slice() porespy.tools.jit_marching_cubes_area_and_volume() porespy.tools.jit_marching_squares_perimeter_and_area() porespy.tools.make_contiguous() porespy.tools.marching_cubes_area_and_volume() porespy.tools.marching_map() porespy.tools.mc_templates_generator() porespy.tools.mesh_region() porespy.tools.overlay() porespy.tools.pad() porespy.tools.parse_shape() porespy.tools.parse_steps() porespy.tools.points_to_spheres() porespy.tools.ps_ball() porespy.tools.ps_disk() porespy.tools.ps_rect() porespy.tools.ps_round() porespy.tools.randomize_colors() porespy.tools.recombine() porespy.tools.results_to_df() porespy.tools.sanitize_filename() porespy.tools.show_docstring() porespy.tools.square() porespy.tools.tic() porespy.tools.toc() porespy.tools.unpad() porespy.visualization.bar() porespy.visualization.imshow() porespy.visualization.prep_for_imshow() porespy.visualization.satn_to_movie() porespy.visualization.satn_to_panels() porespy.visualization.sem() porespy.visualization.set_mpl_style() porespy.visualization.show_3D() porespy.visualization.show_mesh() porespy.visualization.show_panels() porespy.visualization.show_planes() porespy.visualization.xray()

D

data (in module porespy)

divs (porespy.tools.Settings attribute)

F

FORMAT (in module porespy)

L

logger (in module porespy)

loglevel (porespy.tools.Settings property)

M

module porespy porespy.beta porespy.filters porespy.generators porespy.io porespy.metrics porespy.networks porespy.simulations porespy.tools porespy.visualization

N

ncores (porespy.tools.Settings attribute)

notebook (porespy.tools.Settings attribute)

O

overlap (porespy.tools.Settings attribute)

P

porespy module porespy.beta module porespy.beta.df_to_tortuosity() built-in function porespy.beta.fibers_1D() built-in function porespy.beta.fibers_2D() built-in function porespy.beta.flux() built-in function porespy.beta.get_block_sizes() built-in function porespy.beta.local_diff() built-in function porespy.beta.polydisperse_cylinders() built-in function porespy.beta.rev_tortuosity() built-in function porespy.beta.tau_from_cmap() built-in function porespy.beta.tortuosity_bt() built-in function porespy.filters module porespy.filters.apply_chords() built-in function porespy.filters.apply_chords_3D() built-in function porespy.filters.apply_padded() built-in function porespy.filters.capillary_transform() built-in function porespy.filters.chunked_func() built-in function porespy.filters.dilate() built-in function porespy.filters.distance_transform_lin() built-in function porespy.filters.erode() built-in function porespy.filters.fftmorphology() built-in function porespy.filters.fill_closed_pores() built-in function porespy.filters.fill_invalid_pores() built-in function porespy.filters.fill_surface_pores() built-in function porespy.filters.find_closed_pores() built-in function porespy.filters.find_disconnected_voxels() built-in function porespy.filters.find_dt_artifacts() built-in function porespy.filters.find_floating_solid() built-in function porespy.filters.find_invalid_pores() built-in function porespy.filters.find_peaks() built-in function porespy.filters.find_small_clusters() built-in function porespy.filters.find_surface_pores() built-in function porespy.filters.find_trapped_clusters() built-in function porespy.filters.flood() built-in function porespy.filters.flood_func() built-in function porespy.filters.hold_peaks() built-in function porespy.filters.local_thickness() built-in function porespy.filters.local_thickness_bf() built-in function porespy.filters.local_thickness_conv() built-in function porespy.filters.local_thickness_dt() built-in function porespy.filters.local_thickness_imj() built-in function porespy.filters.nl_means_layered() built-in function porespy.filters.nphase_border() built-in function porespy.filters.pc_to_satn() built-in function porespy.filters.pc_to_seq() built-in function porespy.filters.porosimetry() built-in function porespy.filters.prune_branches() built-in function porespy.filters.reduce_peaks() built-in function porespy.filters.region_size() built-in function porespy.filters.satn_to_seq() built-in function porespy.filters.seq_to_satn() built-in function porespy.filters.size_to_pc() built-in function porespy.filters.size_to_satn() built-in function porespy.filters.size_to_seq() built-in function porespy.filters.snow_partitioning() built-in function porespy.filters.snow_partitioning_n() built-in function porespy.filters.snow_partitioning_parallel() built-in function porespy.filters.trim_disconnected_voxels() built-in function porespy.filters.trim_extrema() built-in function porespy.filters.trim_floating_solid() built-in function porespy.filters.trim_nearby_peaks() built-in function porespy.filters.trim_nonpercolating_paths() built-in function porespy.filters.trim_saddle_points() built-in function porespy.filters.trim_saddle_points_legacy() built-in function porespy.filters.trim_small_clusters() built-in function porespy.generators module porespy.generators.blobs() built-in function porespy.generators.borders() built-in function porespy.generators.conical_capillary() built-in function porespy.generators.cylinders() built-in function porespy.generators.cylindrical_pillars_array() built-in function porespy.generators.cylindrical_pillars_mesh() built-in function porespy.generators.cylindrical_plug() built-in function porespy.generators.elevation() built-in function porespy.generators.faces() built-in function porespy.generators.fractal_noise() built-in function porespy.generators.insert_shape() built-in function porespy.generators.lattice_spheres() built-in function porespy.generators.line_segment() built-in function porespy.generators.overlapping_spheres() built-in function porespy.generators.polydisperse_spheres() built-in function porespy.generators.pseudo_electrostatic_packing() built-in function porespy.generators.pseudo_gravity_packing() built-in function porespy.generators.ramp() built-in function porespy.generators.random_cantor_dust() built-in function porespy.generators.random_spheres() built-in function porespy.generators.rectangular_pillars_array() built-in function porespy.generators.sierpinski_foam() built-in function porespy.generators.spheres_from_coords() built-in function porespy.generators.voronoi_edges() built-in function porespy.imshow() built-in function porespy.io module porespy.io.dict_to_vtk() built-in function porespy.io.folder_to_stack() built-in function porespy.io.open_paraview() built-in function porespy.io.to_palabos() built-in function porespy.io.to_paraview() built-in function porespy.io.to_stl() built-in function porespy.io.to_vtk() built-in function porespy.io.zip_to_stack() built-in function porespy.metrics module porespy.metrics.bond_number() built-in function porespy.metrics.boxcount() built-in function porespy.metrics.chord_counts() built-in function porespy.metrics.chord_length_distribution() built-in function porespy.metrics.find_h() built-in function porespy.metrics.find_porosity_threshold() built-in function porespy.metrics.is_percolating() built-in function porespy.metrics.lineal_path_distribution() built-in function porespy.metrics.mesh_surface_area() built-in function porespy.metrics.mesh_volume() built-in function porespy.metrics.pc_map_to_pc_curve() built-in function porespy.metrics.percolating_porosity() built-in function porespy.metrics.phase_fraction() built-in function porespy.metrics.pore_size_distribution() built-in function porespy.metrics.porosity() built-in function porespy.metrics.porosity_by_type() built-in function porespy.metrics.porosity_profile() built-in function porespy.metrics.prop_to_image() built-in function porespy.metrics.props_to_DataFrame() built-in function

porespy.metrics.radial_density_distribution() built-in function porespy.metrics.region_interface_areas() built-in function porespy.metrics.region_surface_areas() built-in function porespy.metrics.region_volumes() built-in function porespy.metrics.regionprops_3D() built-in function porespy.metrics.rev_porosity() built-in function porespy.metrics.rev_tortuosity() built-in function porespy.metrics.satn_profile() built-in function porespy.metrics.two_point_correlation() built-in function porespy.networks module porespy.networks.add_boundary_regions() built-in function porespy.networks.create_model() built-in function porespy.networks.diffusive_size_factor_AI() built-in function porespy.networks.diffusive_size_factor_DNS() built-in function porespy.networks.find_conns() built-in function porespy.networks.find_junctions() built-in function porespy.networks.find_throat_junctions() built-in function porespy.networks.generate_voxel_image() built-in function porespy.networks.get_throat_area() built-in function porespy.networks.juncs_to_pore_centers() built-in function porespy.networks.junctions_to_network() built-in function porespy.networks.label_boundaries() built-in function porespy.networks.label_phases() built-in function porespy.networks.magnet() built-in function porespy.networks.map_to_regions() built-in function porespy.networks.merge_nearby_juncs() built-in function porespy.networks.partition_skeleton() built-in function porespy.networks.regions_to_network() built-in function porespy.networks.regions_to_network_parallel() built-in function porespy.networks.skeleton() built-in function porespy.networks.skeleton_parallel() built-in function porespy.networks.snow2() built-in function porespy.simulations module porespy.simulations.drainage() built-in function porespy.simulations.drainage_bf() built-in function porespy.simulations.drainage_conv() built-in function porespy.simulations.drainage_dt() built-in function porespy.simulations.drainage_dt_conv() built-in function porespy.simulations.ibip() built-in function porespy.simulations.imbibition() built-in function porespy.simulations.imbibition_bf() built-in function porespy.simulations.imbibition_conv() built-in function porespy.simulations.imbibition_dt() built-in function porespy.simulations.imbibition_dt_conv() built-in function porespy.simulations.injection() built-in function porespy.simulations.qbip() built-in function porespy.simulations.tortuosity_fd() built-in function porespy.tools module porespy.tools.align_image_with_openpnm() built-in function porespy.tools.all_to_uniform() built-in function porespy.tools.area_of_triangle() built-in function porespy.tools.ball() built-in function porespy.tools.bbox_to_slices() built-in function porespy.tools.block_size_to_divs() built-in function porespy.tools.calculate_area_and_volume() built-in function porespy.tools.center_of_mass() built-in function porespy.tools.create_mc_template_list() built-in function porespy.tools.cube() built-in function porespy.tools.disk() built-in function porespy.tools.extend_slice() built-in function porespy.tools.extract_cylinder() built-in function porespy.tools.extract_regions() built-in function porespy.tools.extract_subsection() built-in function porespy.tools.face_orientation() built-in function porespy.tools.find_bbox() built-in function porespy.tools.find_outer_region() built-in function porespy.tools.get_block_sizes() built-in function porespy.tools.get_edt() built-in function porespy.tools.get_fixtures_path() built-in function porespy.tools.get_planes() built-in function porespy.tools.get_skel() built-in function porespy.tools.get_slices_grid() built-in function porespy.tools.get_slices_multigrid() built-in function porespy.tools.get_slices_random() built-in function porespy.tools.get_slices_slabs() built-in function porespy.tools.get_strel() built-in function porespy.tools.get_tqdm() built-in function porespy.tools.in_hull() built-in function porespy.tools.insert_cylinder() built-in function porespy.tools.insert_sphere() built-in function porespy.tools.isolate_object() built-in function porespy.tools.jit_extend_slice() built-in function porespy.tools.jit_marching_cubes_area_and_volume() built-in function porespy.tools.jit_marching_squares_perimeter_and_area() built-in function porespy.tools.make_contiguous() built-in function porespy.tools.marching_cubes_area_and_volume() built-in function porespy.tools.marching_map() built-in function porespy.tools.mc_templates_generator() built-in function porespy.tools.mesh_region() built-in function porespy.tools.overlay() built-in function porespy.tools.pad() built-in function porespy.tools.parse_shape() built-in function porespy.tools.parse_steps() built-in function porespy.tools.points_to_spheres() built-in function porespy.tools.ps_ball() built-in function porespy.tools.ps_disk() built-in function porespy.tools.ps_rect() built-in function porespy.tools.ps_round() built-in function porespy.tools.randomize_colors() built-in function porespy.tools.recombine() built-in function porespy.tools.Results (built-in class) porespy.tools.results_to_df() built-in function porespy.tools.sanitize_filename() built-in function porespy.tools.Settings (built-in class) porespy.tools.show_docstring() built-in function porespy.tools.square() built-in function porespy.tools.tic() built-in function porespy.tools.toc() built-in function porespy.tools.unpad() built-in function porespy.visualization module porespy.visualization.bar() built-in function porespy.visualization.imshow() built-in function porespy.visualization.prep_for_imshow() built-in function porespy.visualization.satn_to_movie() built-in function porespy.visualization.satn_to_panels() built-in function porespy.visualization.sem() built-in function porespy.visualization.set_mpl_style() built-in function porespy.visualization.show_3D() built-in function porespy.visualization.show_mesh() built-in function porespy.visualization.show_panels() built-in function porespy.visualization.show_planes() built-in function porespy.visualization.xray() built-in function

S

settings (in module porespy) (in module porespy.tools)

T

tqdm (porespy.tools.Settings attribute)