imagej_wrapper#

imagej_wrapper(im, plugin_name, path)[source]#

Apply ImageJ filters on 3D images.

Parameters:

  • im (ndarray) – The 3D image of the porous material.

  • plugin_name (str) –

    Name of the applied ImageJ plugin which could be one of these options:

    • Distance Transform Watershed 3D

    • Dilation 3D

    • Erosion 3D

    • Opening 3D

    • Closing 3D

    • Median 3D

    • Gaussian Blur 3D

    • Minimum 3D

    • Maximum 3D

    • Mean 3D

  • path (str) – path to the Fiji application in the local directory

Returns:

Outputs a ndarray after applying the desired filter on the image.

Return type:

ndarray